Links to journal pages or PDFs are provided where available and allowable under copyright agreements. Please contact me if you would like a PDF copy of something that you are unable to access.
Jones MD, Hoeksema JD, and Karst J. 2023. Opinion: Where the "Wood-wide Web" narrative went wrong. Undark 05.25.2023.
Karst J, Jones MD, Hoeksema JD. 2023. Positive citation bias and overinterpreted results lead to misinformation on common mycorrhizal networks in forests. Nature Ecology & Evolution 7:501-511 (PDF)
Selected media coverage and commentary related to Karst et al. 2023 (Altmetric summary): Washington Post, New York Times, Scientific American, New Scientist, The Globe and Mail, The Conversation, CBC, Gizmodo, Popular Science, Amaze Lab (1:22 video), ABC Radio (story begins at 11:18), In Defense of Plants podcast (separate interviews with Melanie, Jason, and Justine), Earth to Humans podcast, Saltwire (Canada), Revue Forestiere Francaise (scientific review article in French), La Presse (Canada, French), Le Monde (French), Le Figaro (French), Radio-Canada (French), PÚBLICO (Portuguese), IQ-Wissenschaft und Forschung (5:26 radio clip in German), Deutschlandfunk (6:14 podcast in German), Radio3 Scienza (Italian), Science ORF (German), South American Mycorrhizal Research Network (interview by César Marín and Guillermo Bueno), Vermont forester Ethan Tapper (4:32 video), ScienceAlert, Inverse, Gabriel Popkin blog, Plantae, University of Alberta press release, University of Mississippi press release.
Chatterjee A, Taylor JM, Read QD, Moore M, Locke M, Hoeksema JD. 2023. Shallow water habitat management influences soil CO2 efflux from agricultural fields in the Lower Mississippi River Basin (LMRB), USA. Agrosystems, Geosciences, & Environment 6(2):e20365.
Horning A, Koury S, Meachum M, Kuehn K, Hoeksema JD. 2022. Dirt cheap: An experimental test of controls on resource exchange in an ectomycorrhizal symbiosis. New Phytologist 237:987-998.
Policelli N, Hoeksema JD, Moyano J, Vilgalys R, Vivelo S, Bhatnagar J. 2022. Global pine tree invasions are linked to invasive root symbionts. New Phytologist 237:16-21.
Milani T, Hoeksema JD, Jobbágy E, Rojas JA, Vilgalys R, Teste F. 2022. Co-invading ectomycorrhizal fungal succession in pine-invaded mountain grasslands. Fungal Ecology 60:101176.
Barnett ZC, Adams SB, Hoeksema JD, Easson GL, and Ochs CA. 2022. Effects of impoundments on stream crayfish assemblages. Freshwater Science 41:125-142.
Day LB, Helmhout W, Pano G, Olsson U, Hoeksema JD, Lindsay WR. 2021. Correlated evolution of acrobatic display and both neural and somatic phenotypic traits in manakins (Pipridae). Integrative and Comparative Biology 61:1343-1362.
Cinar O, Umbanhowar J, Hoeksema J D, & Viechtbauer W. 2021. Using information‐theoretic approaches for model selection in meta-analysis. Research Synthesis Methods 12:537-556.
Barnett ZC, Ochs CA, Hoeksema JD, Adams SB. 2021. Not all methods are created equal: assessment of sampling methods for crayfishes and fishes in southern Appalachian streams. Hydrobiologia 848:1491-515.
Hoeksema JD, Averill C, Bhatnagar JM, Brzostek E, Buscardo E, Chen K, Liao H, Nagy L, Policelli N, Ridgeway J, Rojas JA, Vilgalys R. 2020. Ectomycorrhizal plant-fungal co-invasions as natural experiments for connecting plant and fungal traits to their ecosystem consequences. Frontiers in Forests and Global Change 3:84.
Barnett ZC, Ochs CA, Hoeksema JD, Adams SB. 2020. Multi-pass electrofishing sampling efficiency for stream crayfish population estimations. North American Journal of Fisheries Management 40:840-851.
Lokhandwala A, and Hoeksema JD. 2019. Priming by arbuscular mycorrhizal fungi of plant antioxidant enzyme production: A meta-analysis. Annual Plant Reviews 2:1069-1084. (PDF)
Bueno G, Aldrich-Wolfe L, Chaudhary B, Gerz M, Helgason T, Hoeksema JD, Klironomos J, Lekberg Y, Leon D, Maherali H, Öpik M, Zobel M, Moora M. 2019. Misdiagnosis and uncritical use of plant mycorrhizal data are not the only elephants in the room: A response to Brundrett & Tedersoo (2019) ‘Misdiagnosis of mycorrhizas and inappropriate recycling of data can lead to false conclusions’. New Phytologist 224:1415-1418. (PDF)
Bennett, A. E., K. Preedy, A. Golubski, J. Umbanhowar, S. R. Borrett, L. Byrne, K. Apostol, J. D. Bever,L. Biederman, A. T. Classen, K. Cuddington, M.-A. de Graaff, K. A. Garrett, L. Gross, A. Hastings, J. D. Hoeksema,V. Hrynkiv, J. Karst, M. Kummel, C. T. Lee, C. Liang, W. Liao, K. Mack, L. Miller, B. Ownley, C. Rojas, E. L. Simms,V. K. Walsh, M. Warren, and J. Zhu. 2019. Beyond the black box: promoting mathematical collaborations for elucidatinginteractions in soil ecology. Ecosphere 10(7):e02799.
Piculell BJ, Martínez-García PJ, Nelson CD, Hoeksema JD. 2019. Association mapping of ectomycorrhizal traits in loblolly pine (Pinus taeda L.). Molecular Ecology 28(8):2088-2099.
Epps S, Hoeksema JD. 2018. Establishment and Spread of the Scaly-breasted Munia (Lonchura punctulata) in Mississippi. The Mississippi Kite 48(2):47-55. (PDF)
Piculell BJ, Eckhardt LG, Hoeksema JD. 2018. Genetically determined fungal pathogen tolerance and soil variation influence ectomycorrhizal traits of loblolly pine. Ecology and Evolution 8(19):9646-9656.
Rasmussen AL, Brewer JS, Jackson CR, Hoeksema JD. 2018. Tree thinning and fire affect ectomycorrhizal fungal communities and enzyme activities. Ecosphere 9(10):e02471.
Hoeksema JD, Bever JD, Chakraborty S, Chaudhary VB, Gardes M, Gehring CA, Hart MM, Housworth EA, Kaonongbua W, Klironomos JN, Lajeunesse MJ, Meadow J, Milligan BG, Piculell B, Pringle A, Rúa MA, Umbanhowar J, Viechtbauer W, Wang Y-W, Wilson GWT, Zee PC. 2018. Evolutionary history of plant hosts and fungal symbionts predicts the strength of mycorrhizal mutualism. Communications Biology 1:116. Associated data and R code for conducting phylogenetic meta-analysis can be found on Dryad. A "Behind the paper" blog post outlining the history of the collaboration that led to this paper can be found on the Nature Research Ecology & Evolution community site.
Karst J, Burns C, Cale J, Antunes P, Woods M, Lamit L, Hoeksema JD, Zabinski C, Gehring C, La Fleche M, Rua M. 2018. Tree species with limited geographic ranges show extreme responses to ectomycorrhizas. Global Ecology and Biogeography 27:839-848. (PDF)
Hoeksema JD, Roy M, Łaska G, Sienkiewicz A, Horning A, Abbott MJ, Tran C, Mattox J. 2018. Pulsatilla patens (Ranunculaceae), a perennial herb, is ectomycorrhizal in northeastern Poland and likely shares ectomycorrhizal fungi with Pinus sylvestris. Acta Societatis Botanicorum Poloniae 87(1):1-13. (PDF)
Lionheart G, Vandenbrink JP, Hoeksema JD, Kiss JZ. 2018. The impact of simulated microgravity on the growth of different genotypes of the model plant Medicago truncatula. Microgravity Science and Technology 30:491-502. (PDF)
Rasmussen AL, Busby RR, Hoeksema JD. 2018. Host preference of ectomycorrhizal fungi in mixed pine-oak woodlands. Canadian Journal of Forest Research 48(2): 153-159. (PDF)
Rúa MA, Lamit LJ, Gehring C, Antunes PM, Hoeksema JD, Zabinski C, Karst J, Burns C, Woods M. 2018. Accounting for local adaptation in ectomycorrhizas: A call to track geographical origin of plants, fungi, and soils in experiments. Mycorrhiza 28(2):187–195. (PDF)
Trautwig A, Carter E, Hoeksema JD, Nadel R, Lowenstein N, Eckhardt L. 2017. Cogongrass (Imperata cylindrica) affects above and belowground processes in commercial loblolly pine (Pinus taeda) stands. Forest Science 63:10-16. (PDF)
Yang H, Zhang Q, Koide R, Hoeksema JD, Tang J, Bian X, Hu S, Chen X. 2017. Taxonomic resolution is a determinant of biodiversity effects in arbuscular mycorrhizal fungal communities. Journal of Ecology 105:219-228. (PDF)
Craig AJ, Woods S, Hoeksema JD. 2016. Influences of host plant identity and disturbance on spatial structure and community composition of ectomycorrhizal fungi in a northern Mississippi uplands ecosystem. Fungal Ecology 24:7-14. (PDF)
Rúa MA, Antonika A, Anunes PM, Chaudhary VB, Gehring C, Lamit LJ, Piculell BJ, Bever JD, Zabinski C, Meadow JF, Lajeunesse MJ, Milligan BG, Karst J, Hoeksema JD. 2016. Home field advantage? Evidence of local adaptation among plants, soil, and arbuscular mycorrhizal fungi through meta-analysis. BMC Evolutionary Biology 16:122. (Open Access; DOI: 10.1186/s12862-016-0698-9)
V. Bala Chaudhary, Megan A. Rúa, Anita Antoninka, James D. Bever, Jeffery Cannon, Ashley Craig, Jessica Duchicela, Alicia Frame, Monique Gardes, Catherine Gehring, Michelle Ha, Miranda Hart, Jacob Hopkins, Baoming Ji, Nancy Collins Johnson, Wittaya Kaonongbua, Justine Karst, Roger Koide, Louis J. Lamit, James Meadow, Brook G. Milligan, John C. Moore, Thomas H. Pendergast, Bridget Piculell, Blake Ramsby, Suzanne Simard, Shubha Shrestha, James Umbanhowar, Wolfgang Viechtbauer, Lawrence Walters, Gail Wilson, Peter C. Zee, and Jason D. Hoeksema. 2016. MycoDB, a global database of plant response to mycorrhizal fungi. Scientific Data 3, Article number 160028. (DOI:10.1038/sdata.2016.28)
Rúa MA, Wilson EC, Steele S, Munters AR, Hoeksema JD, Frank C. 2016. Associations between ectomycorrhizal fungi and bacterial needle endophytes in Pinus radiata: Implications for biotic selection of microbial communities. Frontiers in Microbiology 7:399. (DOI: 10.3389/fmicb.2016.00399)
Emily I. Jones, Maren L. Friesen, Michelle E. Afkhami, Erol Akcay, Judith L. Bronstein, Redouan Bshary, Megan E. Frederickson, Katy D. Heath, Jason D. Hoeksema, Joshua H. Ness, Sabrina Pankey, Stephanie S. Porter, Joel L. Sachs, Klara Charnagl. 2015. Cheaters must prosper: reconciling theoretical and empirical perspectives on cheating in mutualism. Ecology Letters 18:1270-1284 (Open Access; DOI: 10.1111/ele.12507) **Cover article:
Rúa MA, Moore B, Hergott N, Van L, Jackson CR, and Hoeksema JD. 2015. Ectomycorrhizal fungal communities and enzymatic activities vary across an ecotone between a forest and field. Journal of Fungi 1:185-211 (DOI: 10.3390/jof1020185)
Hoeksema, J.D. 2015. Experimentally testing effects of mycorrhizal networks on plant ecology and distinguishing among mechanisms. In: Mycorrhizal Networks, edited by T.R. Horton. Springer, Ecological Studies 224. DOI: 10.1007/978-94-017-7395-9_9. Download PDF of Chapter 9, or purchase book on Amazon, or access other individual chapters on Springer's website.
Hoeksema J.D. and E.M. Bruna. 2015. Context-dependent outcomes of mutualistic interactions. In: Mutualisms, edited by Judith Bronstein. Oxford University Press. Purchase on Amazon or use promo code on this flier to purchase book at a discount from Oxford University Press.
Karst J, Piculell BJ, Brigham CA, Booth MG, and Hoeksema JD. 2013. Fungal communities in soils along a vegetative ecotone. Mycologia 105:61-70 (DOI:10.3852/12-042). **For a SCULPTURAL TRANSLATION of this paper by artist Kristin Serafini, see HERE.
Hoeksema JD, Hernandez JV, Rogers DR, Mendoza LL, and Thompson JN. 2012. Geographic divergence in a species-rich symbiosis: Interactions between Monterey pines and ectomycorrhizal fungi. Ecology 93:2274–2285 (DOI:10.1890/11-1715.1)
Hoeksema JD and Classen AT. 2012. Is plant genetic control of ectomycorrhizal community composition an untapped source of stable soil carbon in managed forests? Plant and Soil 359:197-204 (DOI:10.1007/s11104-012-1201-z)
Hoeksema JD. 2012. Geographic Mosaics of Coevolution. Nature Education Knowledge 3(3):19
Karst J, Hoeksema JD, Jones MD, and Turkington R. 2011. Parsing the roles of abiotic and biotic factors in Douglas-fir seedling growth. Pedobiologia - International Journal of Soil Biology 54:273-280. (DOI:10.1016/j.pedobi.2011.05.002)
Hoeksema JD. 2010. Tansley review. Ongoing coevolution in mycorrhizal interactions. New Phytologist 187:286-300. (DOI: 10.1111/j.1469-8137.2010.03305.x)
Hoeksema JD, Chaudhary VB, Gehring CA, Johnson NC, Karst J, Koide RT, Pringle A, Zabinski C, Bever JD, Moore JC, Wilson GWT, Klironomos JN, and Umbanhowar J. 2010. A meta-analysis of context-dependency in plant response to inoculation with mycorrhizal fungi. Ecology Letters 13(3):394-407. (DOI: 10.1111/j.1461-0248.2009.01430.x)
Booth MG and Hoeksema JD (both authors contributed equally). 2010. Mycorrhizal networks counteract competitive effects of canopy trees on seedling survival. Ecology 91:2294-2302. (DOI: 10.1890/09-1139.1)
Hoeksema JD. 2010. Peering belowground with increasing clarity: Elucidating belowground processes with cutting-edge tools. Plant and Soil 331:1-3. (DOI: 10.1007/s11104-010-0298-1)
Chaudhary B, Walters L, Bever JD, Hoeksema JD, Wilson GWT. 2010. Advancing synthetic ecology: A database system to facilitate complex ecological meta-analyses. Bulletin of the Ecological Society of America 91:235-243. (DOI: 10.1890/0012-9623-91.2.235)
Hoeksema JD. 2010. Context-dependency rules the day in the grass-endophyte symbiosis. Evolution 64(3):865-867. (A review of “Ecology and Evolution of the Grass-Endophyte Symbiosis” by Gregory P. Cheplick and Stanley H. Faeth, 2009, Oxford University Press). (DOI: 10.1111/j.1558-5646.2009.00855.x)
Hoeksema JD, Piculell BJ and Thompson JN. 2009. Within-population genetic variability in mycorrhizal interactions. Communicative and Integrative Biology 2(2):110-112.
Johnson NC, VB Chaudhary, JD Hoeksema, JN Moore, A Pringle, JA Umbanhowar, GT Wilson. 2009. Mysterious mycorrhizae? A field trip and classroom experiment to demystify the symbioses formed between plants and fungi. The American Biology Teacher 71(7):424-429.
Piculell BJ, JD Hoeksema, and JN Thompson. 2008. Interactions of biotic and abiotic environmental factors on an ectomycorrhizal symbiosis, and the potential for selection mosaics. BMC Biology 6:23 (11 pages). (also see commentary by David Nash in the Journal of Biology)
Hoeksema JD and SE Forde. 2008. A meta-analysis of factors affecting local adaptation between interacting species. The American Naturalist 171:275-290. (DOI: 10.1086/527496)
Hoeksema JD and JN Thompson. 2007. Evolved geographic structure in a widespread plant-ectomycorrhizal interaction: Pines and false truffles. Journal of Evolutionary Biology 20:1148-1163. (DOI: 10.1111/j.1420-9101.2006.01287.x)
Johnson NC, JD Hoeksema, JA Umbanhowar, J Bever, VB Chaudhary, CA Gehring, JN Klironomos, R Koide, J Moore, M Miller, P Moutoglis, MW Schwartz, S Simard, W Swenson, GW Wilson, and C Zabinski. 2006. From Lilliput to Brobdingnag: Extending models of mycorrhizal function across scales. BioScience 56(11):889-900.
Schwartz MW, JD Hoeksema, CA Gehring, NC Johnson, JN Klironomos, LK Abbott, and A Pringle. 2006. Global movement of mycorrhizal fungus inoculum: promise and possible consequences. Ecology Letters 9:501-515. (DOI: 10.1111/j.1461-0248.2006.00910.x)
Hoeksema JD. 2005. Plant-plant interactions vary with different mycorrhizal fungi. Biology Letters 1:439-442. (DOI: 10.1098/rsbl.2005.0381)
Hoeksema JD and M Kummel. 2003. Ecological persistence of the plant-mycorrhizal mutualism: a hypothesis from species coexistence theory. The American Naturalist 162:S40-S50. (DOI: 10.1086/378644)
Hoeksema JD and MW Schwartz. 2003. Expanding comparative-advantage biological market models: contingency of mutualism on partners’ resource requirements and acquisition trade-offs. Proceedings of the Royal Society of London, Series B 270:913-919. (DOI: 10.1098/rspb.2002.2312)
Rudgers, JA and JD Hoeksema. 2003. Interannual variation in the relative importance of herbivory for the annual legume, Lupinus nanus. Plant Ecology 169:105-120.
Hoeksema JD and MW Schwartz. 2001. Modeling interspecific mutualisms as biological markets. Pages 173-183 in: R Noe, JARAM Van Hooff, and P Hammerstein (eds.), Economics in Nature. Cambridge University Press, Cambridge, UK. (PDF) (book information on publisher's website)
Hoeksema JD and EM Bruna. 2000. Pursuing the big questions about interspecific mutualism: a review of theoretical approaches. Oecologia 125:321-330. (DOI: 10.1007/s004420000496)
Hoeksema JD, J Lussenhop and J Teeri. 2000. Soil nematodes indicate food web responses to elevated atmospheric CO2. Pedobiologia 44:725-735.
Schwartz, MW, CA Brigham, JD Hoeksema, KG Lyons, MH Mills and PJ van Mantgem. 2000. Linking biodiversity to ecosystem function: implications for conservation ecology. Oecologia 122:297-305.
Hoeksema JD. 1999. Investigating the disparity in host-specificity between AM and EM fungi: lessons from theory and better-studied systems. Oikos 84:327-332. (PDF)
Brigham CA and JD Hoeksema. 1999. Spatial processes in ecology—a review of Spatial Ecology, D Tilman and P Kareiva, editors. Madroño 46(4):218-219.
Schwartz MW and JD Hoeksema. 1998. Specialization and resource trade: biological markets as a model of mutualisms. Ecology 79(3):1029-1038. (also see commentary in Science News)