Publications

Selvan, D.; Prasad, P.; Farquhar, E.; Shi, Y.; Crane S.; Zhang, Y.; Chakraborty, S. “Redesign of a Copper Storage Protein into an Artificial Hydrogenase”ACS Catal. 2019, 9, 5847-5859
Selvan, D.; Prasad, P.; Crane, S.; Abuhagr, A.; Artyushkova, K.; Guda, R.; Chakraborty, S. “Intrinsically Fluorescent Gold Nanoclusters Stabilized within a Copper Storage Protein that Follow Irving-Williams Trend in Metal Ion Sensing”Analyst 2019, 144, 3949-3958
Sumner, L.; Sakthivel, N. A.; Schrock, H.; Artyushkova, K.; Dass, A.; Chakraborty, S. “Electrocatalytic Oxygen Reduction Activities of Thiol Protected Nanomolecules Ranging in Size from Au28(SR)20 to Au279(SR)84”J.Phys. Chem. C. 2018, 122, 24809-24817
Chen, Y.; Phipps, M. L.; Werner, J. H.; Chakraborty, S.; Martinez, J. S. “DNA Templated Metal Nanoclusters: From Emergent Properties to Unique Applications”Acc. Chem. Res. 2018, 51, 2756-2763
Mitra, S.; Pallavi, P.; Chakraborty, S. “A Unified View of Assessing the Pro-Oxidant vs Antioxidant Nature of Amyloid Beta Conformers” ChemBioChem. 2018, 19, 2360-2371 “Cover Feature”
Jones, T.; Sumner, L.; Ramakrishna, G.; Bin Hatshan, M.; Abuhagr, A; Chakraborty, S.; Dass, A. “Bulky t-Butyl Thiolated Gold Nanomolecular Series: Synthesis, Characterization, Optical Properties, and Electrocatalysis” J. Phys. Chem. C. 2018, 122, 17726-17737 “Cover Feature”
Reed, J.; Shi, Y.; Zhu, Q.; Chakraborty, S.; Mirts, E.; Petrik, I.; Bhagi-Damodaran, A.; Ross, M.; Mo├źnne-Loccoz, P.; Zhang, Y.; Lu, Y. “Manganese and Cobalt in the Nonheme Metal-binding Site of a Biosynthetic Model of Heme-Copper Oxidase Superfamily Confer Oxidase Activity through Redox-inactive Mechanism” J. Am. Chem. Soc. 2017, 139, 12209-12218
Chakraborty, S.; Pallada, S.; Pedersen, J. T.; Jancso, A.; Correia, J. G.; Hemmingsen, L.; “Nanosecond Dynamics at Protein Metal Sites: An Application of Perturbed Angular Correlation (PAC) of g-Rays Spectroscopy” Acc. Chem. Res. 2017, 50, 2225-2232
Fazelinia, H.; Balog, E. R. M.; Desireddy, A.; Chakraborty, S.; Sheehan, C. J.; Strauss, C. E. M.; Martinez, J. S. “Genetically Engineered Elastomeric Polymer Network through Protein Zipper Assembly” Chemistry Select 2017, 2, 5005-5012.
Stachura, M.; Chakraborty, S.; Gottberg, A.; Ruckthong, L.; Pecoraro, V. L.; Hemmingsen, L. “Direct Observation of Nanosecond Water Exchange Dynamics at a Protein Metal Site” J. Am. Chem. Soc. 2017, 139, 79-82.
Chakraborty, S.; Rocha, R. C.; Desireddy, A.; Artyushkova, K.; Perry, A.T.; Sanchez, T.; Atanassov, P.; Martinez, J. S. “Gold Nanocluster Formation Using Morpholino Oligomer as Template and Assembly Agent Within Hybrid Bio-nanomaterials” RSC Adv. 2016, 6, 90624-90630
Bhagi-Damodaran, A.; Michael, M. A.; Zhu, Q.; Reed, J.; Sandoval, B.A.; Mirts, E.; Chakraborty, S.; Moënne-Loccoz, P.; Zhang, Y.; Lu, Y. “Why Copper is Preferred Over Iron for Oxygen Activation and Reduction in Heme-Copper Oxidases” Nat. Chem. 2017, 9, 257-263.
Matsumura, H.; Chakraborty, S.; Reed, J.; Lu, Y.; Moënne-Loccoz, P. “Effect of Outer-Sphere Side Chain Substitutions on the Fate of the trans Iron-Nitrosyl Dimer in Heme/Nonheme Engineered Myoglobins (Fe B Mbs): Insights into the Mechanism of Denitrifying NO Reductases” Biochemistry, 2016, 55, 2091-2099
Chakraborty, S.; Babanova. S.; Rocha, R. C.; Desireddy, A.; Artyushkova, K.; Boncella, A. E.; Atanassov, P.; Martinez, J. S. “A Hybrid DNA-Templated Gold Nanocluster For Enhanced Enzymatic Reduction of Oxygen” J. Am. Chem. Soc. 2015, 137, 11678-11687 (highlighted in Science Daily, EurekAlert!, Los Alamos Daily Post, Santa Fe New Mexican, Nanotechnology News, Phys.Org, Clean Technica, Fuel Cell Works, Biofuels International)
Chakraborty, S.; Wilson, T. D.; Polen, M.; Yu, Y.; Nilges, M. J.; Lu, Y. “Binuclear CuA Formation in Biosynthetic Models of CuA in Azurin Proceeds via a Novel Cu(Cys)2 His Mononuclear Copper Intermediate” Biochemistry, 2015, 54, 6071-6081
Chakraborty, S.; Reed, J.; Sage, J. T.; Branagan, N. C.; Petrik, I. D.; Hu, M. Y.; Zhao, J.; Alp, E. E.; Schulz, C. E.; Lu, Y. “Recent Advances in Biosynthetic Models of Nitric Oxide Reductases and Insights Gained from Nuclear Resonance Vibrational and Other Spectroscopic Studies” Inorg. Chem. 2015, 54, 9317-9329
Chakraborty, S.; Hosseinzadeh, P.; Lu, Y. “Metalloprotein Design and Engineering” Encyclopedia of Inorganic and Bioinorganic Chemistry, R.A. Scott, ed.; John Wiley and Sons, Ltd.: Chichester; 2014, pp. 1-51
Chakraborty, S.; Reed, J.; Ross, M.; Nilges, M. J.; Petrik, I. D.; Ghosh, S.; Hammes-Schiffer, S.; Sage, J. T.; Zhang, Y.; Schulz, C. E.; Lu, Y. “Spectroscopic and Computational Study of a Non-heme Iron-Nitrosyl Center in a Biosynthetic Model of Nitric Oxide Reductase” Angew. Chem. Int. Ed. 2014, 56, 2417-2421
Matsumura, H.; Hayashi, T.; Chakraborty, S.; Lu, Y.; Moënne-Loccoz, P. “The Production of Nitrous Oxide by the Heme/Non-heme Diiron Center of Engineered Myoglobins (Fe(B) Mbs) Proceeds Through a trans Iron-Nitrosyl Dimer” J. Am. Chem. Soc., 2014, 136, 2420-2431
Liu, J.; Chakraborty, S.; Hosseinzadeh, P.; Yu, Y.; Tian, S.; Petrik, I.; Bhagi, A. Lu, Y. “Metalloproteins Containing Cytochrome, Iron-sulfur or Copper Redox Centers” Chem. Rev. (special issue on bioinorganic enzymology II, Eds. Solomon, Edward, and Holm, Richard), 2014, 114, 4366-4469 (co-first author)
Łuczkowski, M.; Zeider, B. A.; Hinz, A. V. H.; Stachura, M.; Chakraborty, S.; Hemmingsen, L.; Huffman, D. L.; Pecoraro, V. L. “Probing the Coordination Environment of the Human Copper Chaperone HAH1: Characterization of a Hg(II)-Bridged Homodimeric Species in Solution” Chem. Eur. J., 2013, 19, 9042-9049
Lu, Y.; Chakraborty, S.; Miner, K. D.; Wilson, T. D.; Mukherjee, A.; Yu, Y.; Liu, J.; Marshall. N. M. “Metalloprotein Design” in Comprehensive Inorganic Chemistry II; Eds. Reedijk, J., Poeppelmeier, K., Elsevier Science, 2013, 3, 565-593
Chakraborty, S.; Iranzo O.; Zuiderweg, E. R. P.; Pecoraro V. L. “Experimental and Theoretical Evaluation of Multisite Cadmium(II) Exchange in Designed Three-Stranded Coiled-Coil Peptides” J. Am. Chem. Soc., 2012, 134, 6191-6203
Chakraborty, S.; Kravitz, J. Y.; Thulstrup, P. W.; Hemmingsen, L.; DeGrado, W.F.; Pecoraro, V. L. “Design of a Three-Helix Bundle Capable of Binding Heavy Metals in a Triscysteine Environment” Angew. Chem. Int. Ed. 2011, 50, 2049-2053. (Highlighted as Inside Cover)
Iranzo, O.; Chakraborty, S.; Hemmingsen, L.; Pecoraro, V. L. “Controlling and Fine Tuning the Physical Properties of Two Identical Metal Coordination Sites in De Novo Designed Three Stranded Coiled Coil Peptides” J. Am. Chem. Soc., 2011, 133, 239-251 (co-first author)
Chakraborty, S.; Touw, D. S.; Peacock, A. F. A.; Stuckey, J. A.; Pecoraro, V. L. “Structural Comparisons of Apo- and Three Stranded Coiled Coils Clarify Metal Binding Determinants in Thiolate Containing Designed Peptides” J. Am. Chem. Soc., 2010, 132, 13240-13250
Maji, S.; Patra, S.; Chakraborty, S.; Janardanan, D.; Mobin, S. M.; Sunoj, R. B.; Lahiri, G. K. “Valence-State Distribution in the Ruthenium o-Quinonoid Systems [Ru(trpy)-(Cl)(L1)]+ and [Ru(trpy)-(Cl)(L2)]+ (L1 = o-Iminobenzoquinone, L2 = o-Diiminobenzoquinone; trpy = 2,2':6',2''-Terpyridine)” Eur. J. Inorg. Chem., 2007, 2, 314-323